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scikit_image
38
color
color
color.combine_stains()
color.convert_colorspace()
color.deltaE_cie76()
color.deltaE_ciede2000()
color.deltaE_ciede94()
color.deltaE_cmc()
color.gray2rgb()
color.grey2rgb()
color.guess_spatial_dimensions()
color.hed2rgb()
color.hsv2rgb()
color.lab2lch()
color.lab2rgb()
color.lab2xyz()
color.label2rgb()
color.lch2lab()
color.rgb2gray()
color.rgb2grey()
color.rgb2hed()
color.rgb2hsv()
color.rgb2lab()
color.rgb2rgbcie()
color.rgb2xyz()
color.rgb2ycbcr()
color.rgb2ydbdr()
color.rgb2yiq()
color.rgb2ypbpr()
color.rgb2yuv()
color.rgbcie2rgb()
color.separate_stains()
color.xyz2lab()
color.xyz2rgb()
color.ycbcr2rgb()
color.ydbdr2rgb()
color.yiq2rgb()
color.ypbpr2rgb()
color.yuv2rgb()
20
data
data
data.astronaut()
data.binary_blobs()
data.camera()
data.checkerboard()
data.chelsea()
data.clock()
data.coffee()
data.coins()
data.horse()
data.hubble_deep_field()
data.immunohistochemistry()
data.lfw_subset()
data.load()
data.logo()
data.moon()
data.page()
data.rocket()
data.stereo_motorcycle()
data.text()
16
draw
draw
draw.bezier_curve()
draw.circle()
draw.circle_perimeter()
draw.circle_perimeter_aa()
draw.ellipse()
draw.ellipse_perimeter()
draw.ellipsoid()
draw.ellipsoid_stats()
draw.line()
draw.line_aa()
draw.polygon()
draw.polygon_perimeter()
draw.random_shapes()
draw.rectangle()
draw.set_color()
10
exposure
exposure
exposure.adjust_gamma()
exposure.adjust_log()
exposure.adjust_sigmoid()
exposure.cumulative_distribution()
exposure.equalize_adapthist()
exposure.equalize_hist()
exposure.histogram()
exposure.is_low_contrast()
exposure.rescale_intensity()
42
external
external
external.tifffile
external.tifffile.imread()
external.tifffile.imsave()
external.tifffile.imshow()
external.tifffile.TiffFile
external.tifffile.TiffFile.asarray()
external.tifffile.TiffFile.close()
external.tifffile.TiffFile.filehandle
external.tifffile.TiffFile.filename
external.tifffile.TiffFile.fstat
external.tifffile.TiffFile.info()
external.tifffile.TiffFile.is_bigtiff
external.tifffile.TiffFile.is_fei
external.tifffile.TiffFile.is_fluoview
external.tifffile.TiffFile.is_imagej
external.tifffile.TiffFile.is_indexed
external.tifffile.TiffFile.is_lsm
external.tifffile.TiffFile.is_mdgel
external.tifffile.TiffFile.is_mediacy
external.tifffile.TiffFile.is_micromanager
external.tifffile.TiffFile.is_nih
external.tifffile.TiffFile.is_ome
external.tifffile.TiffFile.is_rgb
external.tifffile.TiffFile.is_scn
external.tifffile.TiffFile.is_sem
external.tifffile.TiffFile.is_stk
external.tifffile.TiffFile.is_tvips
external.tifffile.TiffFile.is_vista
external.tifffile.TiffFile.series
external.tifffile.TiffFile.__init__()
external.tifffile.TiffSequence
external.tifffile.TiffSequence.asarray()
external.tifffile.TiffSequence.close()
external.tifffile.TiffSequence.ParseError
external.tifffile.TiffSequence.__init__()
external.tifffile.TiffWriter
external.tifffile.TiffWriter.close()
external.tifffile.TiffWriter.save()
external.tifffile.TiffWriter.TAGS
external.tifffile.TiffWriter.TYPES
external.tifffile.TiffWriter.__init__()
46
feature
feature
feature.blob_dog()
feature.blob_doh()
feature.blob_log()
feature.BRIEF
feature.BRIEF.extract()
feature.BRIEF.__init__()
feature.canny()
feature.CENSURE
feature.CENSURE.detect()
feature.CENSURE.__init__()
feature.corner_fast()
feature.corner_foerstner()
feature.corner_harris()
feature.corner_kitchen_rosenfeld()
feature.corner_moravec()
feature.corner_orientations()
feature.corner_peaks()
feature.corner_shi_tomasi()
feature.corner_subpix()
feature.daisy()
feature.draw_haar_like_feature()
feature.draw_multiblock_lbp()
feature.greycomatrix()
feature.greycoprops()
feature.haar_like_feature()
feature.haar_like_feature_coord()
feature.hessian_matrix()
feature.hessian_matrix_det()
feature.hessian_matrix_eigvals()
feature.hog()
feature.local_binary_pattern()
feature.match_descriptors()
feature.match_template()
feature.multiblock_lbp()
feature.ORB
feature.ORB.detect()
feature.ORB.detect_and_extract()
feature.ORB.extract()
feature.ORB.__init__()
feature.peak_local_max()
feature.plot_matches()
feature.register_translation()
feature.shape_index()
feature.structure_tensor()
feature.structure_tensor_eigvals()
71
filters
filters
filters.apply_hysteresis_threshold()
filters.frangi()
filters.gabor()
filters.gabor_kernel()
filters.gaussian()
filters.hessian()
filters.inverse()
filters.laplace()
filters.LPIFilter2D
filters.LPIFilter2D.__init__()
filters.median()
filters.prewitt()
filters.prewitt_h()
filters.prewitt_v()
filters.rank
filters.rank.autolevel()
filters.rank.autolevel_percentile()
filters.rank.bottomhat()
filters.rank.enhance_contrast()
filters.rank.enhance_contrast_percentile()
filters.rank.entropy()
filters.rank.equalize()
filters.rank.geometric_mean()
filters.rank.gradient()
filters.rank.gradient_percentile()
filters.rank.maximum()
filters.rank.mean()
filters.rank.mean_bilateral()
filters.rank.mean_percentile()
filters.rank.median()
filters.rank.minimum()
filters.rank.modal()
filters.rank.noise_filter()
filters.rank.otsu()
filters.rank.percentile()
filters.rank.pop()
filters.rank.pop_bilateral()
filters.rank.pop_percentile()
filters.rank.subtract_mean()
filters.rank.subtract_mean_percentile()
filters.rank.sum()
filters.rank.sum_bilateral()
filters.rank.sum_percentile()
filters.rank.threshold()
filters.rank.threshold_percentile()
filters.rank.tophat()
filters.rank.windowed_histogram()
filters.rank_order()
filters.roberts()
filters.roberts_neg_diag()
filters.roberts_pos_diag()
filters.scharr()
filters.scharr_h()
filters.scharr_v()
filters.sobel()
filters.sobel_h()
filters.sobel_v()
filters.threshold_adaptive()
filters.threshold_isodata()
filters.threshold_li()
filters.threshold_local()
filters.threshold_mean()
filters.threshold_minimum()
filters.threshold_niblack()
filters.threshold_otsu()
filters.threshold_sauvola()
filters.threshold_triangle()
filters.threshold_yen()
filters.try_all_threshold()
filters.wiener()
19
future
future
future.graph
future.graph.cut_normalized()
future.graph.cut_threshold()
future.graph.merge_hierarchical()
future.graph.ncut()
future.graph.RAG
future.graph.RAG.add_edge()
future.graph.RAG.add_node()
future.graph.RAG.copy()
future.graph.RAG.fresh_copy()
future.graph.RAG.merge_nodes()
future.graph.RAG.next_id()
future.graph.RAG.__init__()
future.graph.rag_boundary()
future.graph.rag_mean_color()
future.graph.show_rag()
future.manual_lasso_segmentation()
future.manual_polygon_segmentation()
18
graph
graph
graph.MCP
graph.MCP.find_costs()
graph.MCP.goal_reached()
graph.MCP.traceback()
graph.MCP.__init__()
graph.MCP_Connect
graph.MCP_Connect.create_connection()
graph.MCP_Connect.__init__()
graph.MCP_Flexible
graph.MCP_Flexible.examine_neighbor()
graph.MCP_Flexible.travel_cost()
graph.MCP_Flexible.update_node()
graph.MCP_Flexible.__init__()
graph.MCP_Geometric
graph.MCP_Geometric.__init__()
graph.route_through_array()
graph.shortest_path()
12
Guide
A crash course on NumPy for images
Getting help on using skimage
Getting started
Handling Video Files
How to parallelize loops
I/O Plugin Infrastructure
Image adjustment: transforming image content
Image data types and what they mean
Image Segmentation
Image Viewer
Tutorials
User Guide
28
io
io
io.call_plugin()
io.concatenate_images()
io.find_available_plugins()
io.ImageCollection
io.ImageCollection.concatenate()
io.ImageCollection.conserve_memory
io.ImageCollection.files
io.ImageCollection.reload()
io.ImageCollection.__init__()
io.imread()
io.imread_collection()
io.imread_collection_wrapper()
io.imsave()
io.imshow()
io.imshow_collection()
io.load_sift()
io.load_surf()
io.MultiImage
io.MultiImage.filename
io.MultiImage.__init__()
io.plugin_info()
io.plugin_order()
io.pop()
io.push()
io.reset_plugins()
io.show()
io.use_plugin()
44
measure
measure
measure.approximate_polygon()
measure.block_reduce()
measure.CircleModel
measure.CircleModel.estimate()
measure.CircleModel.predict_xy()
measure.CircleModel.residuals()
measure.CircleModel.__init__()
measure.compare_mse()
measure.compare_nrmse()
measure.compare_psnr()
measure.compare_ssim()
measure.correct_mesh_orientation()
measure.EllipseModel
measure.EllipseModel.estimate()
measure.EllipseModel.predict_xy()
measure.EllipseModel.residuals()
measure.EllipseModel.__init__()
measure.find_contours()
measure.grid_points_in_poly()
measure.label()
measure.LineModelND
measure.LineModelND.estimate()
measure.LineModelND.predict()
measure.LineModelND.predict_x()
measure.LineModelND.predict_y()
measure.LineModelND.residuals()
measure.LineModelND.__init__()
measure.marching_cubes_classic()
measure.marching_cubes_lewiner()
measure.mesh_surface_area()
measure.moments()
measure.moments_central()
measure.moments_coords()
measure.moments_coords_central()
measure.moments_hu()
measure.moments_normalized()
measure.perimeter()
measure.points_in_poly()
measure.profile_line()
measure.ransac()
measure.regionprops()
measure.shannon_entropy()
measure.subdivide_polygon()
35
morphology
morphology
morphology.ball()
morphology.binary_closing()
morphology.binary_dilation()
morphology.binary_erosion()
morphology.binary_opening()
morphology.black_tophat()
morphology.closing()
morphology.convex_hull_image()
morphology.convex_hull_object()
morphology.cube()
morphology.diamond()
morphology.dilation()
morphology.disk()
morphology.erosion()
morphology.h_maxima()
morphology.h_minima()
morphology.label()
morphology.local_maxima()
morphology.local_minima()
morphology.medial_axis()
morphology.octagon()
morphology.octahedron()
morphology.opening()
morphology.reconstruction()
morphology.rectangle()
morphology.remove_small_holes()
morphology.remove_small_objects()
morphology.skeletonize()
morphology.skeletonize_3d()
morphology.square()
morphology.star()
morphology.thin()
morphology.watershed()
morphology.white_tophat()
22
novice
novice
novice.open()
novice.Picture
novice.Picture.alpha
novice.Picture.array
novice.Picture.blue
novice.Picture.compare()
novice.Picture.format
novice.Picture.green
novice.Picture.height
novice.Picture.modified
novice.Picture.path
novice.Picture.red
novice.Picture.reset()
novice.Picture.rgb
novice.Picture.rgba
novice.Picture.save()
novice.Picture.show()
novice.Picture.size
novice.Picture.width
novice.Picture.xy_array
novice.Picture.__init__()
13
restoration
restoration
restoration.cycle_spin()
restoration.denoise_bilateral()
restoration.denoise_nl_means()
restoration.denoise_tv_bregman()
restoration.denoise_tv_chambolle()
restoration.denoise_wavelet()
restoration.estimate_sigma()
restoration.inpaint_biharmonic()
restoration.richardson_lucy()
restoration.unsupervised_wiener()
restoration.unwrap_phase()
restoration.wiener()
19
segmentation
segmentation
segmentation.active_contour()
segmentation.chan_vese()
segmentation.checkerboard_level_set()
segmentation.circle_level_set()
segmentation.clear_border()
segmentation.felzenszwalb()
segmentation.find_boundaries()
segmentation.inverse_gaussian_gradient()
segmentation.join_segmentations()
segmentation.mark_boundaries()
segmentation.morphological_chan_vese()
segmentation.morphological_geodesic_active_contour()
segmentation.quickshift()
segmentation.random_walker()
segmentation.relabel_from_one()
segmentation.relabel_sequential()
segmentation.slic()
segmentation.watershed()
11
skimage
dtype_limits()
img_as_bool()
img_as_float()
img_as_float32()
img_as_float64()
img_as_int()
img_as_ubyte()
img_as_uint()
lookfor()